SNP Profiles of AMAZ 3/2   View Data

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 1234567891011121314
_Input profile
CCAACCTTTTAATTTTCTCCAAGGCCAA
1._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
2._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
3._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
4._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
5._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
6._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
7._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
8._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
12._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._GC-03-022-2-11
CCAACCTT_AATTTTCTCCAAGGCCAA
14._GC-03-022-2-11
CCAACCTTTT_TTTTCTCCAAGGCCAA
15._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
16._GC-03-022-2-11
CC_CCTTTTAATTTTCTCCAAGGCCAA
17._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2
CCAACCTTTT_TTTTCTCCAAGGCCAA
19._AMAZ_3_/2
CCAACCTT_AATTTTCTCCAAGGCCAA
20._AMAZ_3_/2
CC_CCTTTTAATTTTCTCCAAGGCCAA
21._RUQ_91
_AACC-___TT____CCAA
22._RUQ_91
__CC____TT_CC_GG_AA
23._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
24._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
25._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
29._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
30._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
31._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
32._RUQ_91
GGAAGGAAAAAAAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
CTATGGCTCCCGGTAACCAAGGCCCCAA
1._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
2._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
3._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
4._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
5._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
6._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
7._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
8._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
9._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
10._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
11._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
12._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
13._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
14._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
15._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
16._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
17._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
18._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
19._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
20._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
21._RUQ_91
____CC-GT_CCAA-CCCC-
22._RUQ_91
_____CGGTAA_AA__CC_
23._RUQ_91
CTATGGCTCCCGGTAACCAAGGCCCCAA
24._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGCTCCAG
25._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGCTCCAG
26._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGCTCCAG
27._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGCTCCAG
28._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGCTCCAG
29._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGCTCCAG
30._GC-03-022-2-11
CTAACGCCCTGGGG_CTACGGCTCCAG
31._AMAZ_3_/2
CTAACGCCCTGGGG_CTACGGCTCCAG
32._RUQ_91
AGATGGAGGGCGAC_GGAACC_CC_
 2930313233343536373839   
_Input profile
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
1._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
2._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
3._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
4._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
5._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
6._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
7._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
8._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
9._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
10._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
11._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
12._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
13._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
14._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
15._GC-03-022-2-11
GGATTTAAGGAA_GTAAATGGX_XX_XX_X
16._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
17._AMAZ_3_/2
GGATTTAAGGAA_GTAAATGGX_XX_XX_X
18._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
19._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
20._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
21._RUQ_91
_AT-AAGGAACCGTAA__X_XX_XX_X
22._RUQ_91
___AA____AA__X_XX_XX_X
23._RUQ_91
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
24._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
25._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
26._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
27._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
28._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
29._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
30._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
31._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
32._RUQ_91
GGATAAAACCAAGGACAAATGGX_XX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

1._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

13._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

identical
18 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_3_/2 RUQ_91

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._AMAZ_3_/2 RUQ_91

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

25._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

30._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

32._AMAZ_3_/2 RUQ_91

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25